PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.YW6UW
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 310aa    MW: 35099.6 Da    PI: 6.9986
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.YW6UWgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind378.8e-12254302148
                   HHHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT- CS
  HSF_DNA-bind   1 aFlkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhs 48 
                   +Fl k+y++++d+ ++++isw+  ++nsf+v+++ ef + ++p+yFk++
   Aradu.YW6UW 254 TFLLKTYDMVDDSFTNDIISWNsPTNNSFIVWNPPEFLRILVPTYFKKR 302
                   69********************8889*************999*****86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.0E-12249302IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.4E-9251301IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.6E-4251310IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-7255302IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MKLPKGYWWR TFQLAGPNRI QLLISFLDHD VLYYVRETPS YYFGVSENDD GHLPDVIYGL  60
VPGSFYHNYR ADLLLYDFKI GIAAIAIAQQ HGHNPLQDPR SADPQCFDLL GDQSQGALIL  120
TFPLIGIRGE IVRNGDVQEM LLLITSIVNA ICSGCPCSRK PVELHTTNNN NGHNLLKKAR  180
HDPHPFFAST GTVTVLFSNN TTRKDHSSPY FLSFTTTNHH SYLEYASFLS LHNFGIGSYS  240
SSRTEGGVRR GPATFLLKTY DMVDDSFTND IISWNSPTNN SFIVWNPPEF LRILVPTYFK  300
KREKEEEGGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-14HSF family protein